Diagnosing and Resolving Random Segmentation Faults Across Multiple Processes in Linux Systems


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The kernel logs show segmentation faults occurring in various processes including Perl (imapsync), PHP (php5-cgi), rsync, and munin-related processes. The errors manifest differently:

// Example errors from the log:
[ 5316.246303] imapsync[4533]: segfault at 8b ip 00007fb448c98fe6 sp 00007ffff571dd68 error 4 in libperl.so.5.10.1[7fb448bd7000+164000]
[40250.390322] BUG: unable to handle kernel paging request at 00000000024b03f0
[215584.262316] BUG: unable to handle kernel paging request at 00000000ffffff9c

When facing random segfaults across multiple processes, consider these diagnostic approaches:

# Check system logs comprehensively
sudo grep -i segfault /var/log/{kern.log,messages,syslog}
sudo dmesg | grep -i segfault

# Verify package integrity for affected binaries
sudo debsums -c perl php5-cgi rsync

# Check for memory corruption
sudo memtester 4G 1
stress --cpu $(nproc) --vm $(nproc) --vm-bytes 1G --timeout 60s

When basic checks don't reveal the issue, deeper investigation is needed:

# Install debug symbols for better backtraces
sudo apt-get install php5-dbg perl-dbg

# Capture core dumps for analysis
ulimit -c unlimited
echo "/tmp/core.%e.%p" | sudo tee /proc/sys/kernel/core_pattern

# Use gdb to analyze core dumps
gdb /usr/bin/php5-cgi /tmp/core.php5-cgi.1234
(gdb) bt full
(gdb) info registers

The kernel oops messages suggest deeper system issues:

# Check kernel messages for hardware-related errors
dmesg | grep -E 'MC|MCE|EDAC|Hardware Error'

# Verify kernel module stability
lsmod | grep -E 'edac|mce|k8temp'

# Consider updating microcode
sudo apt-get install amd64-microcode intel-microcode
sudo update-initramfs -u

Based on the error patterns, several possibilities emerge:

  • Memory corruption (despite negative memtest results)
  • Kernel bugs or incompatible modules
  • CPU microcode issues
  • Filesystem corruption
  • Shared library conflicts

Methodically test each potential cause:

# Check for filesystem errors
sudo fsck -Af -M

# Test with alternative memory allocator
sudo apt-get install libgoogle-perftools4
export LD_PRELOAD="/usr/lib/libgoogle_perftools.so.4"

# Monitor system calls leading to crashes
strace -f -o /tmp/trace.log php-cgi test.php

Implement continuous monitoring to catch future occurrences:

#!/bin/bash
# segfault_monitor.sh
while true; do
    if dmesg | tail -n 50 | grep -q "segfault"; then
        logger "Segfault detected - capturing system state"
        ps auxf > /var/log/crash_ps_$(date +%s).log
        vmstat 1 10 > /var/log/crash_vmstat_$(date +%s).log
        dmesg > /var/log/crash_dmesg_$(date +%s).log
    fi
    sleep 30
done

The segmentation faults are occurring across multiple unrelated processes (Perl, PHP, rsync) with different memory addresses involved. The kernel logs show various types of memory-related errors:

// Example error patterns seen
1. Standard segfault in libperl: imapsync[4533]: segfault at 8b ip 00007fb448c98fe6
2. PHP memory corruption: php5-cgi[4441]: segfault at 2bb3dc8 ip 0000000002bb3dc8
3. Kernel paging error: BUG: unable to handle kernel paging request at 00000000024b03f0
4. General protection fault: munin-update[22519] general protection ip:7f516dce204c

Before diving deep, let's verify some basic system health checks:

# Check system logs
sudo dmesg -T | grep -i segfault
sudo journalctl -k --since "24 hours ago" | grep -i fault

# Verify memory with multiple passes
sudo memtester 1G 5

# Check CPU stability
stress --cpu $(nproc) --timeout 1800

When hardware tests pass but segfaults persist, we need deeper instrumentation:

# Install debugging symbols
sudo apt-get install linux-image-$(uname -r)-dbg
sudo apt-get install php5-dbg perl-dbg

# Capture core dumps
echo "core.%e.%p" | sudo tee /proc/sys/kernel/core_pattern
ulimit -c unlimited

# Use gdb with backtraces
gdb /usr/bin/php5-cgi core.php5-cgi.1234
(gdb) bt full

Based on the logs, we need to investigate several potential issues:

// Potential fix for PHP memory corruption
; Update php.ini settings
zend_extension=opcache.so
opcache.enable=1
opcache.enable_cli=1
opcache.memory_consumption=256
opcache.interned_strings_buffer=16
opcache.max_accelerated_files=10000

The kernel oops messages suggest deeper system issues:

# Check kernel parameters
sysctl -a | grep vm
echo 1 | sudo tee /proc/sys/vm/panic_on_oom
echo 1 | sudo tee /proc/sys/kernel/sysrq

# Monitor memory pressure
apt-get install linux-tools-common linux-tools-$(uname -r)
sudo perf stat -e 'kmem:*' -a sleep 10

When traditional methods fail, consider:

# Test with different memory allocators
sudo apt-get install libjemalloc1
export LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libjemalloc.so.1

# Verify compiler flags used for installed packages
apt-get download php5-common
dpkg-deb -x php5-common*.deb ./php-extract
readelf -p .GCC.command.line ./php-extract/usr/bin/php5