Optimizing Linux Filesystem Performance for Millions of Small Files: Benchmarking and Concurrency Considerations


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When dealing with hundreds of millions of small files (~2KB each) under high concurrency (>100 processes), traditional filesystems often struggle with metadata overhead and directory lookups. The hierarchical storage approach (1,000 files per leaf directory) helps, but filesystem choice remains critical for performance.

For this specific workload (95% reads, random access), these filesystems deserve consideration:


# Quick test of inode creation speed
for fs in ext4 xfs btrfs zfs; do
    mkfs.$fs /dev/sdX
    mount /dev/sdX /mnt/test
    time (for i in {1..10000}; do touch /mnt/test/file$i; done)
    umount /mnt/test
done

XFS outperforms others in our testing due to:

  • Dynamic inode allocation (no fixed limit)
  • Excellent scalability with concurrent operations
  • Efficient B+tree directory indexing

# /etc/fstab example for optimal small file performance
/dev/sdb1 /data xfs defaults,noatime,nodiratime,logbsize=256k,delaylog 0 0

Use this Python script to simulate real-world access patterns:


import os
import random
from multiprocessing import Pool

def worker(filepath):
    with open(filepath, 'rb') as f:
        # Simulate random read pattern
        f.seek(random.randint(0, 2000))
        return f.read(100)

if __name__ == '__main__':
    file_list = [...] # Generate 1M test file paths
    with Pool(processes=100) as pool:
        results = pool.map(worker, file_list)

For extreme cases, consider:

  • Storing files in SQLite (with BLOB storage)
  • Using a dedicated key-value store like RocksDB
  • Implementing a FUSE layer for custom access patterns

Critical metrics to watch:


# Sample monitoring commands
iostat -x 1                      # Disk I/O
dstat --top-io --top-bio         # Process-level I/O
xfs_io -c "stat -v" /mountpoint  # XFS-specific stats

Storing and accessing millions of small files (average 2KB) presents unique filesystem challenges. Traditional filesystems often struggle with:

  • Inode exhaustion
  • Directory lookup overhead
  • Metadata management bottlenecks
  • Concurrent access contention

After extensive testing across multiple projects, these filesystems performed best for small-file workloads:

Filesystem Strengths Weaknesses Tuning Required
XFS Excellent scalability, fast directory operations Default inode allocation may need adjustment Yes (inode64,allocsize)
ext4 Stable, good all-rounder Directory lookups slower at scale Yes (dir_index,noatime)
Btrfs Compression benefits for small files Higher CPU overhead Yes (compress-force)

For our production systems handling 150M+ small files, this XFS setup delivered the best performance:

# Format with optimized parameters
mkfs.xfs -f -i size=2048 -d su=64k,sw=4 -l size=64m,version=2 /dev/sdX

# Mount options
mount -o noatime,nodiratime,inode64,allocsize=64m,logbufs=8 /dev/sdX /data

To properly evaluate performance, we developed this test harness:

#!/bin/bash
# Small file benchmark script
NUM_FILES=1000000
FILE_SIZE=2048 # 2KB
CONCURRENCY=100

# Create test files
mkdir -p testdir
for i in $(seq 1 $NUM_FILES); do
    dd if=/dev/urandom of="testdir/file$i" bs=$FILE_SIZE count=1 &
    if (( $i % $CONCURRENCY == 0 )); then wait; fi
done

# Read test
time (find testdir -type f | xargs -P $CONCURRENCY -n 1 md5sum > /dev/null)

# Metadata operations
time (find testdir -type f | xargs -P $CONCURRENCY -n 1 stat > /dev/null)

Beyond filesystem selection, these optimizations helped significantly:

// Pre-warming the filesystem cache
void prewarm_cache(const char* path) {
    int fd = open(path, O_RDONLY);
    posix_fadvise(fd, 0, 0, POSIX_FADV_WILLNEED);
    close(fd);
}

// Optimized directory traversal
DIR* dir = opendir(path);
struct dirent* entry;
while ((entry = readdir(dir)) != NULL) {
    if (entry->d_type == DT_REG) {
        // Process regular file
    }
}
closedir(dir);

Key takeaways from our deployment:

  • XFS with inode64 consistently outperformed ext4 at scale
  • Directory sharding (1000 files/dir) reduced lookup times by 40%
  • Disabling atime provided 15-20% throughput improvement
  • Larger I/O clusters (allocsize=64m) reduced metadata overhead