How to Implement an SFTP Server with S3 Backend for Petabyte-Scale File Transfers


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When dealing with petabyte-scale file transfers via SFTP, traditional storage solutions quickly hit scalability limits. The key requirements here are:

  • Unlimited storage capacity that grows automatically
  • Minimal maintenance overhead
  • Cost-effective storage for rarely accessed files
  • Secure file transfer capabilities

Here are three viable approaches to implement an SFTP gateway for S3:


# Option 1: AWS Transfer Family + S3 (Fully Managed)
# No code required - just configure in AWS Console
AWS Transfer Family → S3 Bucket (with lifecycle policies)

# Option 2: EC2 + SFTP Gateway Software
EC2 Instance (Amazon Linux) → 
    s3fs-fuse (mount S3 as filesystem) → 
    OpenSSH (with chroot) → 
    S3 Bucket

# Option 3: Containerized Solution
Docker Container (atmoz/sftp) → 
    Custom sync script → 
    S3 Bucket (using AWS CLI sync)

Here's how to implement the EC2-based solution with proper S3 integration:


# Install required packages
sudo yum install -y openssh-server s3fs-fuse awscli

# Create s3 mount point
sudo mkdir /mnt/s3bucket
sudo chown ec2-user:ec2-user /mnt/s3bucket

# Configure s3fs (requires IAM role with S3 permissions)
echo "my-s3-bucket:/ /mnt/s3bucket fuse.s3fs _netdev,allow_other,iam_role=auto,umask=002,uid=1000,gid=1000 0 0" | sudo tee -a /etc/fstab

# Mount the bucket
sudo mount -a

# SSH configuration for SFTP-only access
sudo vi /etc/ssh/sshd_config

For secure multi-user isolation:


Match Group sftponly
    ChrootDirectory /mnt/s3bucket/%u
    ForceCommand internal-sftp
    X11Forwarding no
    AllowTcpForwarding no

# Create user with restricted access
sudo useradd -G sftponly -d /incoming partner1
sudo mkdir -p /mnt/s3bucket/partner1/incoming
sudo chown partner1:sftponly /mnt/s3bucket/partner1/incoming

Use this Python script to process new uploads:


import boto3
import pyinotify
import os

s3 = boto3.client('s3')
BUCKET = 'my-s3-bucket'

class EventHandler(pyinotify.ProcessEvent):
    def process_IN_CLOSE_WRITE(self, event):
        if not event.dir:
            s3_key = os.path.relpath(event.pathname, '/mnt/s3bucket')
            s3.upload_file(event.pathname, BUCKET, s3_key)
            os.remove(event.pathname)

wm = pyinotify.WatchManager()
handler = EventHandler()
notifier = pyinotify.Notifier(wm, handler)
wdd = wm.add_watch('/mnt/s3bucket', pyinotify.IN_CLOSE_WRITE, rec=True)
notifier.loop()
  • Use EC2 instance with sufficient network bandwidth (m5.2xlarge or larger)
  • Enable S3 Transfer Acceleration for better throughput
  • Set proper S3 multipart upload thresholds (16MB+) for large files
  • Consider S3 Intelligent-Tiering storage class for cost optimization

When dealing with petabyte-scale file transfers via SFTP while needing cloud storage integration, we face three fundamental technical constraints:

  • Traditional SFTP servers require local storage provisioning
  • S3's object storage isn't natively compatible with SFTP protocols
  • Filesystem mounting solutions often fail at scale

Here's a battle-tested architecture we've deployed for clients handling 500TB+ monthly uploads:

# Infrastructure as Code (Terraform)
module "sftp_s3_gateway" {
  source  = "terraform-aws-modules/sftp/aws"
  version = "~> 2.0"

  name_prefix          = "petabyte-sftp"
  vpc_id              = aws_vpc.main.id
  subnet_ids          = aws_subnet.private[*].id
  s3_bucket_name      = aws_s3_bucket.uploads.id
  transfer_server_endpoint_type = "VPC"
  protocols           = ["SFTP"]
  
  # Auto-scaling configuration
  scaling_config = {
    min_size = 2
    max_size = 10
    target_value = 75 # CPU utilization %
  }
}

Option 1: AWS Transfer Family + S3 Direct

The fully-managed AWS solution requires minimal setup:

aws transfer create-server \
  --domain S3 \
  --protocols SFTP \
  --identity-provider-type SERVICE_MANAGED \
  --tags Key=Environment,Value=Production

Option 2: Self-Hosted SFTP with S3FS FUSE

For custom control, mount S3 via FUSE:

# Install s3fs on EC2
sudo apt-get install s3fs

# Configure credentials
echo ACCESS_KEY_ID:SECRET_ACCESS_KEY > ~/.passwd-s3fs
chmod 600 ~/.passwd-s3fs

# Mount bucket
s3fs my-upload-bucket /mnt/sftp/uploads \
  -o passwd_file=~/.passwd-s3fs \
  -o url=https://s3.amazonaws.com \
  -o umask=0022 \
  -o allow_other \
  -o nonempty
  • Chunked Uploads: Implement multi-part uploads for files >1GB
  • Parallel Transfer: Use lftp mirror mode for client-side optimization
  • Metadata Handling: Store file metadata in DynamoDB for faster lookups

From our production experience:

# Critical monitoring metrics
aws cloudwatch put-metric-alarm \
  --alarm-name SFTP_Connection_Saturation \
  --metric-name ConnectedClients \
  --namespace AWS/Transfer \
  --statistic Maximum \
  --period 300 \
  --evaluation-periods 1 \
  --threshold 95 \
  --comparison-operator GreaterThanThreshold

Essential IAM policy for SFTP users:

{
  "Version": "2012-10-17",
  "Statement": [
    {
      "Effect": "Allow",
      "Action": [
        "s3:PutObject",
        "s3:GetObject",
        "s3:DeleteObject"
      ],
      "Resource": "arn:aws:s3:::upload-bucket/${transfer:HomeFolder}/*"
    }
  ]
}