How to Securely Add GitHub’s SSH Host Key to known_hosts File: A Step-by-Step Guide


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When working with SSH connections, particularly with services like GitHub, you want to ensure secure host verification while eliminating annoying prompts. The known_hosts file plays a crucial role in this process by storing verified host keys.

Instead of disabling security checks with StrictHostKeyChecking=no, we'll implement a proper verification workflow:

GitHub publishes their current SSH key fingerprints at their documentation page. As of my last check, these include:

256 SHA256:uNiVztksCsDhcc0u9e8BujQXVUpKZIDTMczCvj3tD2s (RSA)
256 SHA256:br9IjFspm1vxR3iA35FWE+4VTyz1hYVLIE2t1/CeyWQ (ECDSA)
256 SHA256:4pwGscpUF3kYfH3kG4b7y5X1UQ/sZqOnl4nY7JVSWBw (Ed25519)

Use ssh-keyscan to get the actual keys from GitHub's servers:

ssh-keyscan -t rsa,ecdsa,ed25519 github.com > github_keys.tmp

This creates a temporary file containing all host keys in the standard known_hosts format.

Now we'll verify each key's fingerprint matches GitHub's published values:

ssh-keygen -lf github_keys.tmp

The output should show SHA256 fingerprints matching the official ones from GitHub's documentation. For example:

256 SHA256:uNiVztksCsDhcc0u9e8BujQXVUpKZIDTMczCvj3tD2s github.com (RSA)
256 SHA256:br9IjFspm1vxR3iA35FWE+4VTyz1hYVLIE2t1/CeyWQ github.com (ECDSA)
256 SHA256:4pwGscpUF3kYfH3kG4b7y5X1UQ/sZqOnl4nY7JVSWBw github.com (Ed25519)

Once verified, you can safely add the keys to your known_hosts file:

cat github_keys.tmp >> ~/.ssh/known_hosts

For additional security, you can hash the hostnames in known_hosts:

ssh-keygen -H -f ~/.ssh/known_hosts

Note that you can mix hashed and unhashed entries in the same file.

Here's a complete script that performs all steps:

#!/bin/bash

# Fetch GitHub's keys
ssh-keyscan -t rsa,ecdsa,ed25519 github.com > github_keys.tmp

# Verify fingerprints
if ! ssh-keygen -lf github_keys.tmp | grep -q \
    -e "uNiVztksCsDhcc0u9e8BujQXVUpKZIDTMczCvj3tD2s" \
    -e "br9IjFspm1vxR3iA35FWE+4VTyz1hYVLIE2t1/CeyWQ" \
    -e "4pwGscpUF3kYfH3kG4b7y5X1UQ/sZqOnl4nY7JVSWBw"; then
    echo "Fingerprint verification failed!"
    rm github_keys.tmp
    exit 1
fi

# Add to known_hosts
cat github_keys.tmp >> ~/.ssh/known_hosts
rm github_keys.tmp

echo "GitHub host keys added successfully."

For deeper verification, you can extract and check individual keys:

# Extract the RSA key (assuming it's the first line)
awk '/ssh-rsa/{print $2,$3}' github_keys.tmp | head -1 | \
    awk '{print $1}' | base64 -d | openssl asn1parse -inform DER

This shows the ASN.1 structure of the RSA key for additional verification.

By following this process, you maintain SSH's security guarantees while eliminating prompts for trusted hosts. The key steps are:

  • Obtain official fingerprints from a trusted source
  • Retrieve host keys directly from the server
  • Verify cryptographic fingerprints match
  • Only then add to your known_hosts file

When cloning repositories via SSH, you'll encounter the host key verification prompt unless GitHub's key exists in your ~/.ssh/known_hosts file. While StrictHostKeyChecking=no bypasses this, it leaves you vulnerable to MITM attacks. The proper solution involves:

GitHub publishes their current SSH key fingerprints at their documentation page. As of 2023, these are the valid fingerprints:

SHA256:uNiVztksCsDhcc0u9e8BujQXVUpKZIDTMczCvj3tD2s (RSA)
SHA256:br9IjFspm1vxR3iA7C7mxS1m7vdUYaRWj3BCmWXYZPw (ECDSA)
SHA256:br9IjFspm1vxR3iA7C7mxS1m7vdUYaRWj3BCmWXYZPw (Ed25519)

Use ssh-keyscan to fetch the actual keys from GitHub's servers:

ssh-keyscan -t rsa,ecdsa,ed25519 github.com > /tmp/github_keys.tmp

This creates a temporary file containing raw public keys in known_hosts format.

For each key in the output, generate its fingerprint and match against GitHub's published values:

ssh-keygen -lf /tmp/github_keys.tmp

The output should show SHA256 fingerprints matching GitHub's documentation.

Once verified, append the validated keys to your known_hosts:

cat /tmp/github_keys.tmp >> ~/.ssh/known_hosts

For additional security, you can hash the hostnames in known_hosts:

ssh-keygen -H -f ~/.ssh/known_hosts

This converts plaintext hostnames to cryptographic hashes while maintaining functionality.

Here's a complete bash script that performs all verification steps:

#!/bin/bash

# Fetch GitHub's official fingerprints (simplified)
OFFICIAL_FINGERPRINTS=(
    "SHA256:uNiVztksCsDhcc0u9e8BujQXVUpKZIDTMczCvj3tD2s"
    "SHA256:br9IjFspm1vxR3iA7C7mxS1m7vdUYaRWj3BCmWXYZPw"
)

# Scan GitHub's keys
TMP_FILE=$(mktemp)
ssh-keyscan -t rsa,ecdsa,ed25519 github.com > $TMP_FILE

# Verify fingerprints
while read -r line; do
    if [[ "$line" == \#* ]]; then continue; fi
    fingerprint=$(ssh-keygen -lf <(echo "$line") | awk '{print $2}')
    if ! printf '%s\n' "${OFFICIAL_FINGERPRINTS[@]}" | grep -q "^$fingerprint$"; then
        echo "WARNING: Invalid fingerprint detected: $fingerprint"
        exit 1
    fi
done < $TMP_FILE

# Append to known_hosts
cat $TMP_FILE >> ~/.ssh/known_hosts
rm $TMP_FILE
echo "Successfully added verified GitHub keys to known_hosts"

GitHub occasionally rotates their SSH keys. To update your local cache:

  1. Remove old GitHub entries from known_hosts:
  2. ssh-keygen -R github.com
    
  3. Repeat the verification process above